- Apalachee
- Apalachicola
- Apalachicola Bradwell Unit
- Apalachicola River Type II
- Apalcahicola River WEA
- Aucilla
- Blackwater
- Blackwater Carr Unit
- Blackwater Hutton Unit
- Blue Water Creek
- Choctawhatchee/Holmes Type II
- Econfina Creek Type II NWFWMD
- Ed Ball
- Eglin AFB Type II
- Escambia River Type II NWFWMB
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- Flint Rock
- Joe Budd
- L. Kirk Edwards WEA
- Ochlockonee River
- Pine Log
- Point Washington
- Robert Brent
- St. Marks NWR
- St. Vincent Island NWR
- Talquin
- Tate's Hell
- Tate's Hell Womack Creek Unit
- Tyndall AFB Type II
- Upper Chipola River Type II
- Yellow River Type II NWFWMB
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